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microarray analysis service  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray analysis service
    Pathway analysis comparing treatment groups. Ingenuity Pathway Analysis was used to predict signaling pathways between Arrest and Sham mice (top), Sham+Metformin (Sham+Met) and Sham mice (middle), and Arrest+Metformin (Arrest+Met) to Arrest mice (bottom) based on <t>microarray</t> data collected from left ventricles one day after arrest (n = 6/group). Bar-graphs include significance values for pathway changes (−log(p-value)) and are colored according to z-score to predict directionality of changes. Differentially expressed genes were included in the analysis when p < 0.05 based on microarray data. Principal component analysis, volcano plots, and hierarchical clustering are included in .
    Microarray Analysis Service, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+analysis+services/pmc10327679-73-8-12
    Average 90 stars, based on 1 article reviews
    microarray analysis service - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Metformin preconditioning protects against myocardial stunning and preserves protein translation in a mouse model of cardiac arrest"

    Article Title: Metformin preconditioning protects against myocardial stunning and preserves protein translation in a mouse model of cardiac arrest

    Journal: Journal of molecular and cellular cardiology plus

    doi: 10.1016/j.jmccpl.2023.100034

    Pathway analysis comparing treatment groups. Ingenuity Pathway Analysis was used to predict signaling pathways between Arrest and Sham mice (top), Sham+Metformin (Sham+Met) and Sham mice (middle), and Arrest+Metformin (Arrest+Met) to Arrest mice (bottom) based on microarray data collected from left ventricles one day after arrest (n = 6/group). Bar-graphs include significance values for pathway changes (−log(p-value)) and are colored according to z-score to predict directionality of changes. Differentially expressed genes were included in the analysis when p < 0.05 based on microarray data. Principal component analysis, volcano plots, and hierarchical clustering are included in .
    Figure Legend Snippet: Pathway analysis comparing treatment groups. Ingenuity Pathway Analysis was used to predict signaling pathways between Arrest and Sham mice (top), Sham+Metformin (Sham+Met) and Sham mice (middle), and Arrest+Metformin (Arrest+Met) to Arrest mice (bottom) based on microarray data collected from left ventricles one day after arrest (n = 6/group). Bar-graphs include significance values for pathway changes (−log(p-value)) and are colored according to z-score to predict directionality of changes. Differentially expressed genes were included in the analysis when p < 0.05 based on microarray data. Principal component analysis, volcano plots, and hierarchical clustering are included in .

    Techniques Used: Microarray

    Related Articles

    other:

    Article Title: Harnessing underutilized gene bank diversity and genomic prediction of cross usefulness to enhance resistance to Phytophthora cactorum in strawberry.
    Article Snippet: The raw genotypic data files returned by ThermoFisher Scientific were analyzed using the Axiom Analysis Suite Software v4.0.3.3 (https://www.thermofisher.com/us/en/home/lifescience/microarray-analysis/microarray-analysisinstruments-software-services/microarray-analysissoftware/axiom-analysis-suite.html).

    Software:

    Article Title: Replacement of Vitamin E by an Extract from an Olive Oil by-Product, Rich in Hydroxytyrosol, in Broiler Diets: Effects on Liver Traits, Oxidation, Lipid Profile, and Transcriptome.
    Article Snippet: Samples of total RNA were processed using an Affimetrix GeneChip Array (Chicken Gene 1.0 ST), which represents 18,214 genes, according to the Applied BiosystemsTM GeneChipTM Whole Transcript (WT) PLUS Reagent KIT User Guide (Thermo Fisher Scientific, Waltham, MA, USA). .. The processed GeneChips were scanned, and the obtained cell intensity files, which provided an individual intensity value for each probe cell, were made from the image data employing the Command Console Software (https://www.thermofisher.com/de/de/home/life-science/microarray-analysis/ microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrixgenechip-command-console-software.html (accessed on 5 September 2023)) (Affimetrix, Santa Clara, CA, USA). .. Additionally, the Applied BiosystemTM Transcriptome Analysis Console (TAC, v.4.0.2) software (Thermo Fisher Scientific) was used to analyze the compressed array image files (CEL files), calculate the summarized probe set signals with the Robust Multichip Analysis algorithm, perform the fold change (FC) comparisons, and calculate the significance p-values (ANOVA).

    Article Title: Noncanonical atherosclerosis as the driving force in tricuspid aortic valve associated aneurysms - A trace collection.
    Article Snippet: The long non-coding ribonucleic acid and messenger ribonucleic acid transcription profiles of the samples were determined by Clariom D solutions for the Affymetrix Gene 4 J. Lipid Res. (2023) 64(3) 100338 Chip (Santa Clara, CA). .. The microarray analysis was performed using Transcriptome Console Software (Thermo Fisher Scientific, Version 1.2.1, https://www.thermofisher.com/at/en/ home/life-science/microarray-analysis/microarray-analysisinstruments-software-services/microarray-analysis-software/ affymetrix-transcriptome-analysis-console-software.html). ..

    Article Title: Replacement of Vitamin E by an Extract from an Olive Oil by-Product, Rich in Hydroxytyrosol, in Broiler Diets: Effects on Liver Traits, Oxidation, Lipid Profile, and Transcriptome
    Article Snippet: Samples of total RNA were processed using an Affimetrix GeneChip Array (Chicken Gene 1.0 ST), which represents 18,214 genes, according to the Applied Biosystems TM GeneChip TM Whole Transcript (WT) PLUS Reagent KIT User Guide (Thermo Fisher Scientific, Waltham, MA, USA). .. The processed GeneChips were scanned, and the obtained cell intensity files, which provided an individual intensity value for each probe cell, were made from the image data employing the Command Console Software ( https://www.thermofisher.com/de/de/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html (accessed on 5 September 2023)) (Affimetrix, Santa Clara, CA, USA). .. Additionally, the Applied Biosystem TM Transcriptome Analysis Console (TAC, v.4.0.2) software (Thermo Fisher Scientific) was used to analyze the compressed array image files (CEL files), calculate the summarized probe set signals with the Robust Multichip Analysis algorithm, perform the fold change (FC) comparisons, and calculate the significance p -values (ANOVA).

    Article Title: Chicken whole-genome SNP chip and use thereof
    Article Snippet: The chip scanning was performed using a GeneChip HT Array Plate Scanner chip scanner (GeneChip HT Array Plate Scanner, Thermos Fisher Scientific company, USA). .. Data Analysis: Genotypes were analyzed using Axiom Analysis Suite (software download www.thermofisher.com/cn/zh/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html, source of the software: www.thermofisher.com), and the R language (www.rproject.org) was used for programming so as to obtain genotype comparison results. .. The 1062 random selected individuals of the fast-growing white-feather broiler K line were subjected to IASCHICK chip detection (performed according to the method of Example 2), with the quality control conditions for genotype: individual call rate (CR)>95%, MAF>0.05, Hardy-Weinberg equilibrium test >0.001.

    Article Title: Ral GTPase promotes metastasis of pancreatic ductal adenocarcinoma via elevation of TGF-β1 production
    Article Snippet: .. The array data were generated using the Transcriptome analysis console software (Thermo Fisher Scientific, https://www.thermofisher.cn/cn/zh/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-transcriptome-analysis-console-software.html ) to analyze gene expression differences ( ). ..

    Microarray:

    Article Title: Replacement of Vitamin E by an Extract from an Olive Oil by-Product, Rich in Hydroxytyrosol, in Broiler Diets: Effects on Liver Traits, Oxidation, Lipid Profile, and Transcriptome.
    Article Snippet: Samples of total RNA were processed using an Affimetrix GeneChip Array (Chicken Gene 1.0 ST), which represents 18,214 genes, according to the Applied BiosystemsTM GeneChipTM Whole Transcript (WT) PLUS Reagent KIT User Guide (Thermo Fisher Scientific, Waltham, MA, USA). .. The processed GeneChips were scanned, and the obtained cell intensity files, which provided an individual intensity value for each probe cell, were made from the image data employing the Command Console Software (https://www.thermofisher.com/de/de/home/life-science/microarray-analysis/ microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrixgenechip-command-console-software.html (accessed on 5 September 2023)) (Affimetrix, Santa Clara, CA, USA). .. Additionally, the Applied BiosystemTM Transcriptome Analysis Console (TAC, v.4.0.2) software (Thermo Fisher Scientific) was used to analyze the compressed array image files (CEL files), calculate the summarized probe set signals with the Robust Multichip Analysis algorithm, perform the fold change (FC) comparisons, and calculate the significance p-values (ANOVA).

    Article Title: Noncanonical atherosclerosis as the driving force in tricuspid aortic valve associated aneurysms - A trace collection.
    Article Snippet: The long non-coding ribonucleic acid and messenger ribonucleic acid transcription profiles of the samples were determined by Clariom D solutions for the Affymetrix Gene 4 J. Lipid Res. (2023) 64(3) 100338 Chip (Santa Clara, CA). .. The microarray analysis was performed using Transcriptome Console Software (Thermo Fisher Scientific, Version 1.2.1, https://www.thermofisher.com/at/en/ home/life-science/microarray-analysis/microarray-analysisinstruments-software-services/microarray-analysis-software/ affymetrix-transcriptome-analysis-console-software.html). ..

    Comparison:

    Article Title: Chicken whole-genome SNP chip and use thereof
    Article Snippet: The chip scanning was performed using a GeneChip HT Array Plate Scanner chip scanner (GeneChip HT Array Plate Scanner, Thermos Fisher Scientific company, USA). .. Data Analysis: Genotypes were analyzed using Axiom Analysis Suite (software download www.thermofisher.com/cn/zh/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html, source of the software: www.thermofisher.com), and the R language (www.rproject.org) was used for programming so as to obtain genotype comparison results. .. The 1062 random selected individuals of the fast-growing white-feather broiler K line were subjected to IASCHICK chip detection (performed according to the method of Example 2), with the quality control conditions for genotype: individual call rate (CR)>95%, MAF>0.05, Hardy-Weinberg equilibrium test >0.001.

    Generated:

    Article Title: Ral GTPase promotes metastasis of pancreatic ductal adenocarcinoma via elevation of TGF-β1 production
    Article Snippet: .. The array data were generated using the Transcriptome analysis console software (Thermo Fisher Scientific, https://www.thermofisher.cn/cn/zh/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-transcriptome-analysis-console-software.html ) to analyze gene expression differences ( ). ..

    Gene Expression:

    Article Title: Ral GTPase promotes metastasis of pancreatic ductal adenocarcinoma via elevation of TGF-β1 production
    Article Snippet: .. The array data were generated using the Transcriptome analysis console software (Thermo Fisher Scientific, https://www.thermofisher.cn/cn/zh/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-transcriptome-analysis-console-software.html ) to analyze gene expression differences ( ). ..



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    Image Search Results


    Pathway analysis comparing treatment groups. Ingenuity Pathway Analysis was used to predict signaling pathways between Arrest and Sham mice (top), Sham+Metformin (Sham+Met) and Sham mice (middle), and Arrest+Metformin (Arrest+Met) to Arrest mice (bottom) based on microarray data collected from left ventricles one day after arrest (n = 6/group). Bar-graphs include significance values for pathway changes (−log(p-value)) and are colored according to z-score to predict directionality of changes. Differentially expressed genes were included in the analysis when p < 0.05 based on microarray data. Principal component analysis, volcano plots, and hierarchical clustering are included in .

    Journal: Journal of molecular and cellular cardiology plus

    Article Title: Metformin preconditioning protects against myocardial stunning and preserves protein translation in a mouse model of cardiac arrest

    doi: 10.1016/j.jmccpl.2023.100034

    Figure Lengend Snippet: Pathway analysis comparing treatment groups. Ingenuity Pathway Analysis was used to predict signaling pathways between Arrest and Sham mice (top), Sham+Metformin (Sham+Met) and Sham mice (middle), and Arrest+Metformin (Arrest+Met) to Arrest mice (bottom) based on microarray data collected from left ventricles one day after arrest (n = 6/group). Bar-graphs include significance values for pathway changes (−log(p-value)) and are colored according to z-score to predict directionality of changes. Differentially expressed genes were included in the analysis when p < 0.05 based on microarray data. Principal component analysis, volcano plots, and hierarchical clustering are included in .

    Article Snippet: Microarray analysis was performed on cDNA through the Affymetrix microarray analysis service (ThermoFisher).

    Techniques: Microarray